Atf5 107503

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Gene ID: 107503
Gene symbol: atf5
Gene Description: activating transcription factor 5
Aliases: AFTA; Atf7; Atfx; MGC102397; ODA-10
Human Ortholog Gene ID: [22809]
Reviewer Judgement: TF Gene
Functional Classification: DNA-Binding: sequence-specific
DBD Protein Group Classification: Zipper-Type Group
DBD Protein Group/Family Classification: Zipper-Type Group / Leucine Zipper Family
Homolog Cluster(s): 107503

Evidence:

Pubmed ID Function Species Evidence Strength Reviewer's Comments Reviewer
[15735663] DNA Binding Human; Other Strong ATF7-induced transactivation is mediated by hsTAF12 by Gal4-ATF7 fusion proteins in Cos-1 cells with a vector expressing each of the hsTAFs being tested.

ATF7 and hsTAF12 interact in vivo by immunoprecipitation in COS-1 cells (with antibodies against ATF7 and Western Blotting using anti-TAF12 antibodies). Chromatin immunoprecipitation (ChIP) on a human lymphoid cell line (Raji cells) using an E-selectin gene demonstrates that ATF7 or TAF12 efficiently immunoprecipitates with the E-selectin promoter region suggesting simultaneous binding of both proteins to the target promoter, in vivo.

Debra Fulton
[16164412] Transactivation Human Medium Cotransfection into HepG2 cells with an expression vector encoding ATF5 and reporter gene containing the nutrient-sensing response unit of the asparagine synthetase demonstrates that ATF5 transactivates the reporter gene.

An arginine-lysine rich basic region suggests that ATF5 has sequence-specific DNA binding but this was not demonstrated by experiments. Cotransfection of a Gal4-ATF5 fusion in HepG2 cells demonstrates that ATF5 contains an active transcriptional activation domains.

Debra Fulton
Additional Reviewer Comments:
Reviewer: Debra Fulton

Atf5 is a transcription factor. It interacts with TAF12 (by immunoprecipitation) and binds an E-selectin promoter by ChIP assay. It activates a Gal4 reporter gene fused to a GAL4 DNA binding domain demonstrating that it contains an active transcriptional activation domain and this activation potential is enhanced when TAF12 is present. It also activates a reporter gene containing the nutrient-sensing response unit of the asparagine synthetase gene.


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Facts about Atf5 107503RDF feed
Gene description activating transcription factor 5  +
Gene id 107,503  +
Gene judgment TF Gene  +
Gene symbol atf5  +, AFTA  +, Atf7  +, Atfx  +, MGC102397  +, and ODA-10  +
Gene taxonomy DNA-Binding: sequence-specific  +
Homolog cluster 107,503  +
Protein family 3 Zipper-Type Group/21 Leucine Zipper Family  +
Protein group 3 Zipper-Type Group   +
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