About

The long-term goal of TFe is to create an online encyclopedic collection of well-studied transcription factor proteins in the human, mouse, and rat genomes, combining a mixture of both expert-curated and automatically-populated content to provide users with a wide set of information relevant to a transcription factor protein of their interest.

In the short-term, we are working with experts from around the world to produce over 100 high-quality "mini review" articles of key transcription factors for publication in a peer-reviewed, open-access journal. We are pleased to report that we are on track to publish this collection of reviews in the first quarter of 2010.

The TFe provides details of transcription factor binding sites in close collaboration with Pazar, a public database of transcription factor and regulatory sequence information. Our TF classification scheme is derived from TFCat. The TFe is an initiative of the Wasserman laboratory.

Team

Wyeth Wasserman, PhD

Principal Investigator

Elodie Portales-Casamar, PhD

Lead, Pazar Team

Phil Bradley, PhD

Lead, Structural Prediction

Dimas Yusuf, MD (cand)

Software Development

Warren Cheung, PhD (cand)

Statistical analysis

Debra Fulton, PhD

TF Classification

Stefanie Butland, MSc

Project Management (alumnus)

Magdalena Swanson, MSc

Project Management (alumnus)

Amy Ticoll, BSc

Structural Prediction (alumnus)

Content

Transcription factor articles
Human articles	215
Mouse articles	586
Rat articles	2
Total	803
Articles with authors	176
Articles with binding site data	313
Participating authors	106

Article completion scores (164 articles with authors)

About 120 articles score 50% or more.

Participating authors

	Note: this list may change prior to publication depending on participation and article completion.
Australia	Daniel J. Peet, Sam W. Z. Olechnowicz
Canada	Amy Ticoll, Charles N. de Leeuw, Christopher TD Dickman, David Laperriere, David P LeBrun, Debra L Fulton, Dimas Yusuf, Edwin Chen, Elizabeth M. Simpson, Elizabeth Wederell, Elodie Portales-Casamar, Juan Hou, Juliet M Daniel, Kyster K. Nanan, Magdalena I Swanson, Margaret R. Hough, Marieke Rozendaal, Mark W. Woodcroft, Pamela A. Hoodless, Rebecca L Cullum, Stefanie L Butland, Sylvie Mader, Wyeth W Wasserman, Xiao Yu Cindy Zhang
Denmark	Lars Grontved, Susanne Mandrup
France	Bérénice A. Benayoun, Dominique Leprince, Gaylor Boulay, Mireille Vasseur-Cognet, Oscar H. P. Ramos, Reiner A. Veitia
Germany	Gerhart U. Ryffel, Michael Wegner
Italy	Mariastella Zannini, Tiziana de Cristofaro
Poland	Jerzy Ostrowski, Michal Mikula
Spain	Leonardo L Beccari, Paola Bovolenta, Raquel Marco-Ferreres
Sweden	Chunyan Zhao, Karin Dahlman-Wright
Switzerland	Mario P. Tschan
The Netherlands	Astrid Eijkelenboom, Bianca Blom, Julien J. Karrich, Marrit Putker
United Kingdom	Alison H. Banham, Eric W.-F. Lam, G. Nicholas Europe-Finner, Helma D. C. Schwenen, Jan J. Brosens, Jarrod Bailey, Lara J. Monteiro, Magdalena Karolczak-Bayatti, Michael Taggart, Miranda S. C. Wilson, Padma-Sheela Jayaraman, Peter John Noy, Philip J. Brown, Ralf Kist
United States	Angie Rizzino, Bruce E. Torbett, Capucine Van Rechem, Carol F. Webb, Christopher J. Harvey, Eugene Bolotin, Farhad Vesuna, Frances M. Sladek, Harini Chakravarthy, Henriette O'Geen, Jake M. Schnabl, Jason P. DeBruyne, Jason Park, John Hogenesch, Kathleen Joyce Millen, Kelly L. Prince, M. Michela Mancarelli, Marissa Cathleen Blank, Mary B. Breslin, Matthew E. Witek, Michael S. Lan, Michaela Liedtke, Michelle Vaz, Oliver - Hankinson, Peggy J Farnham, Philip H Bradley, Rachel D Mullen, Richard M. Gronostajski, Robert Hevner, Rumela Chakrabarti, Satrajit Sinha, Scott Ferrell, Scott Waldman, Sekhar P. Reddy, Seth Frietze, Shyam Biswal, Simon J Rhodes, Stephanie C. Colvin, Venu Raman, Xin M. Luo, Yunfu Sun, Yuriko Mishima,