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About
The long-term goal of TFe is to create an online encyclopedic collection of well-studied transcription factor proteins in the human, mouse, and rat genomes, combining a mixture of both expert-curated and automatically-populated content to provide users with a wide set of information relevant to a transcription factor protein of their interest.
In the short-term, we are working with experts from around the world to produce over 100 high-quality "mini review" articles of key transcription factors for publication in a peer-reviewed, open-access journal. We are pleased to report that we are on track to publish this collection of reviews in the first quarter of 2010.
The TFe provides details of transcription factor binding sites in close collaboration with Pazar, a public database of transcription factor and regulatory sequence information. Our TF classification scheme is derived from TFCat. The TFe is an initiative of the Wasserman laboratory.
Team
Wyeth Wasserman, PhD
Principal Investigator
Elodie Portales-Casamar, PhD
Lead, Pazar Team
Phil Bradley, PhD
Lead, Structural Prediction
Dimas Yusuf, MD (cand)
Software Development
Warren Cheung, PhD (cand)
Statistical analysis
Debra Fulton, PhD (cand)
TF Classification
Stefanie Butland, MSc
Project Management (alumnus)
Magdalena Swanson, MSc
Project Management (alumnus)
Amy Ticoll, BSc
Structural Prediction (alumnus)
Content
| Transcription factor articles |
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| Human articles |
215 |
| Mouse articles |
586 |
| Rat articles |
2 |
| Total |
803 |
| Articles with authors |
176 |
| Articles with binding site data |
312 |
| Registered authors |
126 |
| Article completion scores (164 articles with authors) |
About 120 articles score 50% or more.
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Authors
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Note: this list may change prior to publication depending on participation and article completion.
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Australia |
Daniel J. Peet, Sam W. Z. Olechnowicz
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Belgium |
Frederic Lemaigre
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Canada |
Adrienne Borrie, Charles N. de Leeuw, David D. Eisenstat, David Laperriere, David LeBrun, Dimas Yusuf, Edwin Chen, Elizabeth M. Simpson, Elizabeth Wederell, Elodie Portales-Casamar, Jonathan Lim, Juan Hou, Kyster K. Nanan, Magdalena Swanson, Margaret Hough, Marieke Rozendaal, Mark W. Woodcroft, Pamela A. Hoodless, Rebecca L Cullum, Stefanie Butland, Sylvie Mader, Wyeth Wasserman
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Denmark |
Lars Grontved, Susanne Mandrup
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France |
Bérénice A. Benayoun, Capucine Fleuriel, Dominique Leprince, Gaylor Boulay, Mireille Vasseur-Cognet, Oscar H. P. Ramos, Reiner A. Veitia
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Germany |
Gerhart U. Ryffel, Michael Wegner, Thomas Meyer
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Italy |
Giulio Srubek Tomassy, Maria Armentano, Mariastella Zannini, Michèle Studer, Tiziana de Cristofaro
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Poland |
Jerzy Ostrowski, Michal Mikula
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Spain |
Leonardo Beccari, Paola Bovolenta, Raquel Marco-Ferreres
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Sweden |
Chunyan Zhao, Karin Dahlman-Wright
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Switzerland |
Benoit R. Gauthier, Christophe Héligon, Mario P. Tschan
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The Netherlands |
Astrid Eijkelenboom, Bianca Blom, Julien J. Karrich, Marrit Putker
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United Kingdom |
Alison H. Banham, Eric W.-F. Lam, G. Nicholas Europe-Finner, Helma D. C. Schwenen, Jan J. Brosens, Jarrod Bailey, Lara J. Monteiro, Magdalena Karolczak-Bayatti, Michael Taggart, Miranda S. C. Wilson, Padma-Sheela Jayaraman, Peter John Noy, Philip J. Brown, Ralf Kist
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United States |
Angie Rizzino, Brian Saunders, Bruce E. Torbett, Carl T. Fulp, Carol F. Webb, Christopher C. Wolford, Christopher J. Harvey, David S Sharlin, Deepti Malhotra, Douglas Forrest, Erik Zmuda, Eugene Bolotin, Farhad Vesuna, Frances M. Sladek, Gautam Chaudhuri, Harini Chakravarthy, Henriette O'Geen, Jake M. Schnabl, Jason P. DeBruyne, Jason Park, John Hogenesch, Kathleen Joyce Millen, Kelly L. Prince, Lisa Christine Watson, M. Michela Mancarelli, Marissa Cathleen Blank, Mary B. Breslin, Matthew E. Witek, Michael L Cleary, Michael S. Lan, Michaela Liedtke, Michelle Vaz, Mukul K. Mittal, Oliver Hankinson, Peggy Farnham, Rachel D Mullen, Richard Gronostajski, Robert Hevner, Rui Xiao, Rumela Chakrabarti, Satrajit Sinha, Scott Ferrell, Scott Waldman, Sebastiaan H. Meijsing, Sekhar P. Reddy, Seth Frietze, Shyam Biswal, Simon J Rhodes, Smita Misra, Stephanie C. Colvin, Tsonwin Hai, Tye Deering, Venu Raman, Xin Luo, Yunfu Sun, Yuriko Mishima, |
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