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Overview

Retinoic acid receptors (RARs) are members of the nuclear receptor (NR) superfamily of ligand-dependent transcription factors. Three family members exist, alpha, beta and gamma, each gene being expressed into several isomers that vary in their N-terminus. RARs share the common nuclear receptor organization in several regions of homology, corresponding to different functional domains [1]. The N-terminal A/B region contains the AF-1 transactivation domain, which functions independently of ligand binding. The DNA binding domain, a type-II zinc finger motif, is located in region C. Finally, the D/E/F regions contain the ligand-binding domain and a second transactivation domain, AF-2, which functions in a ligand-dependent fashion.

RARs bind DNA as heterodimers with members of another family of NRs, the retinoid X receptors (RXRs). RAR/RXR heterodimers bind specific retinoic acid response elements (RAREs), usually composed of two or more repeats of the motif PuG(G/T)TCA arranged as direct repeats but also inverted or everted repeats [2]. In the absence of the ligand retinoic acid (RA), the RAR/RXR heterodimers are bound to the DNA and repress transcription through recruitment of corepressors such as NCoR or SMRT. Ligand binding induces a conformational change that allows for the dissociation of corepressors and the recruitment of coactivators[3][4].

RARs control gene pathways that play important roles during development and cell differentiation through direct DNA binding, but also through tethering to DNA via protein-protein interactions with other transcription factors and through non-genomic mechanisms of action [5][6].

References
  1. Germain P et al. International Union of Pharmacology. LX. Retinoic acid receptors. Pharmacol. Rev., 58(4):712-25. (PMID 17132850)
  2. Claessens F and Gewirth DT. DNA recognition by nuclear receptors. Essays Biochem., 40:59-72. (PMID 15242339)
  3. Chawla A et al. Nuclear receptors and lipid physiology: opening the X-files. Science, 294(5548):1866-70. (PMID 11729302)
  1. McKenna NJ and O'Malley BW. Combinatorial control of gene expression by nuclear receptors and coregulators. Cell, 108(4):465-74. (PMID 11909518)
  2. Balmer JE and Blomhoff R. Gene expression regulation by retinoic acid. J. Lipid Res., 43(11):1773-808. (PMID 12401878)
  3. Balmer JE and Blomhoff R. A robust characterization of retinoic acid response elements based on a comparison of sites in three species. J. Steroid Biochem. Mol. Biol., 96(5):347-54. (PMID 16081280)
Figures
FIGURE 1 Mechanism of target gene regulation by RAR/RXR heterodimers.
RAR/RXR heterodimers recognize retinoic acid response elements (RARE) that are typically composed of direct repeats of the motif PuG(G/T)TCA, separated by 2 or 5 nucleotides. In the absence of ligand, the RAR/RXR heterodimers are bound to the DNA in association with corepressors (CoR). Upon binding of the ligand, retinoic acid (RA), a conformational change allows for the dissociation of corepressors and recruitment of coactivators (CoA), leading to the transcription of target genes.
This figure was created by the authors of this article. The authors of this article have provided the assurance that this figure constitutes their original work.