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RARB  retinoic acid receptor, beta | | Classification | Homo sapiens » Zinc-coordinating Group » Hormone-nuclear Receptor Family » Subfamily 1 (TR, RAR, PPAR, REV-ERB, E78, RZR/ROR, CNR14, ECR, VDR, DHR96, NHR1, and 27 individual genes) | | Related TF(s) | (none defined here) | Homologs  | • Rarb | | Links | ENSG00000077092 (Ensembl) 5915 (Entrez Gene) Homologene 180220 (OMIM) | | Synonyms | RRB2, NR1B2, HAP |
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The article completion score for this TF is 89%. Refresh score » The article completion score is designed to help authors identify parts of their articles that can be expanded upon. We highly recommend completing the following steps to significantly increase this article's score: Please provide more information in the Overview section of the Targets tab. Please provide more information in the Genetics section of the Genetics tab. If applicable, please provide more information in the Isoforms section of the Protein tab. Please provide more information in the Overview section of the Expression tab. Please provide more information in the Covalent modifications section of the Protein tab. Please provide more information in the Overview section of the Interactions tab.
Overview
All members of the RAR family of nuclear receptor interact with members of the RXR family to form heterodimers that bind DNA with high affinity. Interactions between the DNA binding domain are sufficient to confer selectivity of DNA binding.[1] The ligand binding domains of RARs interact with a variety of transcriptional coregulators. Corepressors NCoR and SMRT are bound in the absence of ligand while other corepressors such as NRIP1 and LCoR can be bound in the presence of ligand. Ligand also induces recruitment of coactivators, including histone acetyl-transferases NCOA1/2/3 and CBP/p300, histone methyl-transferases, ATP-dependent chromatin remodeling complexes, and of components of the mediator complex and basal transcription machinery.[2][3][4]. In addition, RARs interact with other transcription factors such as the AP1 complex, enabling recruitment of RARs to DNA via tethering and possibly formation of chromatin loops between RARs and other transcription factors bound to the promoter/enhancers of RA target genes.
References
- Mader S et al. The patterns of binding of RAR, RXR and TR homo- and heterodimers to direct repeats are dictated by the binding specificites of the DNA binding domains. EMBO J., 12(13):5029-41. (PMID 8262045)
- McKenna NJ and O'Malley BW. Combinatorial control of gene expression by nuclear receptors and coregulators. Cell, 108(4):465-74. (PMID 11909518)
- Rochette-Egly C and Germain P. Dynamic and combinatorial control of gene expression by nuclear retinoic acid receptors (RARs). , 7:e005. (PMID 19471584)
- Chambon P. A decade of molecular biology of retinoic acid receptors. FASEB J., 10(9):940-54. (PMID 8801176)
Ligands (author curated)
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Ligand |
Experiment Types and Papers |
Nature of Interaction |
| 1 | Tretinoin CID 444795 | Not specified | Physical: with co-activator affecting recruitment | | 2 | Tretinoin CID 444795 | Not specified | Regulatory: increases expression of this TF |
Interactions (author curated)
| |
Interactor |
Experiment Types and Papers |
Nature of Interaction |
| 1 |
EP300 (human) |
Invitro
8779723 |
Physical: with co-activator affecting recruitment |
| 2 |
FOS (human) |
Invitro
2176152 |
Physical: with another TF |
| 3 |
JUN (human) |
Invitro
1648728 |
Physical: with another TF |
| 4 |
NCOA1 (human) |
Invitro
8754792 |
Physical: with co-activator affecting recruitment |
| 5 |
NCOR1 (human) |
Two-hybrid
9531570, 10336495 |
Physical: with co-repressor affecting recruitment |
| 6 |
NRIP1 (human) |
Two-hybrid
12403842 |
Physical: with co-repressor affecting recruitment |
| 7 |
RXRA (human) |
Invitro
1310351 |
Physical: with another TF: complex binds DNA |
| 8 |
RXRB (human) |
Invitro
1310259 |
Physical: with another TF: complex binds DNA |
| 9 |
RXRG (human) |
Two-hybrid
16189514 |
Physical: with another TF: complex binds DNA |
| 10 |
SP1 (human) |
Reconstituted Complex
10361124 |
Physical: with another TF |
Transcriptional regulators (automatically populated)
| |
Regulating TF complex |
Regulating TF |
Genomic links |
GO terms (biological process) |
Pubmed |
| 1 |
CREB1_HUMAN TF0000358 |
CREB1 Homo sapiens |
ENSG00000118260
1385 (Entrez Gene) |
19 terms found |
7969156 |
|
| 2 |
RARA_HUMAN TF0000449 |
RARA Homo sapiens |
ENSG00000131759
5914 (Entrez Gene) |
20 terms found |
7969156 |
cellular response to estrogen stimulus positive regulation of binding positive regulation of transcription from RNA polymerase II promoter retinoic acid receptor signaling pathway (IMP, 17538076) positive regulation of T-helper 2 cell differentiation (IDA, 18416830) positive regulation of cell cycle positive regulation of gene-specific transcription (IMP, 19628791) positive regulation of gene-specific transcription positive regulation of interleukin-5 production (IDA, 18416830) positive regulation of interleukin-4 production (IDA, 18416830) positive regulation of interleukin-13 production (IDA, 18416830) negative regulation of tumor necrosis factor production (IDA, 18416830) negative regulation of gene-specific transcription negative regulation of interferon-gamma production (IDA, 18416830) response to retinoic acid (IMP, 17538076) response to estradiol stimulus (IDA, 15831516) estrogen receptor signaling pathway (IDA, 15831516) positive regulation of cell proliferation signal transduction (IDA, 2825025) regulation of transcription, DNA-dependent   |
| 3 |
RARB_HUMAN TF0000793 |
RARB Homo sapiens |
ENSG00000077092
5915 (Entrez Gene) |
12 terms found |
2153268 |
|
| 4 |
RXR/RAR_HUMAN TF0000788 |
RARA Homo sapiens |
ENSG00000131759
5914 (Entrez Gene) |
20 terms found |
16081280 |
cellular response to estrogen stimulus positive regulation of binding positive regulation of transcription from RNA polymerase II promoter retinoic acid receptor signaling pathway (IMP, 17538076) positive regulation of T-helper 2 cell differentiation (IDA, 18416830) positive regulation of cell cycle positive regulation of gene-specific transcription (IMP, 19628791) positive regulation of gene-specific transcription positive regulation of interleukin-5 production (IDA, 18416830) positive regulation of interleukin-4 production (IDA, 18416830) positive regulation of interleukin-13 production (IDA, 18416830) negative regulation of tumor necrosis factor production (IDA, 18416830) negative regulation of gene-specific transcription negative regulation of interferon-gamma production (IDA, 18416830) response to retinoic acid (IMP, 17538076) response to estradiol stimulus (IDA, 15831516) estrogen receptor signaling pathway (IDA, 15831516) positive regulation of cell proliferation signal transduction (IDA, 2825025) regulation of transcription, DNA-dependent   |
| 5 |
TBP_HUMAN TF0000327 |
TBP Homo sapiens |
ENSG00000112592
6908 (Entrez Gene) |
11 terms found |
7969156 |
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